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Recent Member Publications

January 2012

  • Godler DE, Slater HR, Bui QM, Storey E, Ono MY, Gehling F, et alJ - Fragile X Mental Retardation 1 (FMR1) Intron 1 Methylation in Blood Predicts Verbal Cognitive Impairment in Female Carriers of Expanded FMR1 Alleles: Evidence from a Pilot Study. Clin Chem. 2012 Jan 10. [Epub ahead of print] - Article
    AEpiA members / laboratory?

    The Murdoch Childrens Research Institute | The Royal Children's Hospital Melbourne


    • October 2011

  • Lee HJ, Hinshelwood RA, Bouras T, Gallego-Ortega D, Valdés-Mora F, Blazek K, Visvader JE, Clark SJ, Ormandy CJ - Lineage specific methylation of the elf5 promoter in mammary epithelial cells. Stem Cells. 2011 Oct;29(10):1611-9. doi: 10.1002/stem.706. - Article
    AEpiA members / laboratory?

    Garvan Institute of Medical Research, NSW, Australia


    • Sept 2011

  • Mayor R, Muñoz M, Coolen MW, Custodio J, Esteller M, Clark SJ, Peinado MA - Dynamics of bivalent chromatin domains upon drug induced reactivation and resilencing in cancer cells. Epigenetics. 2011 Sep 1;6(9). [Epub ahead of print] - Article
    AEpiA members / laboratory?

    Garvan Institute of Medical Research, NSW, Australia


    • July 2011

  • Valdés-Mora F, Song JZ, Statham AL, Strbenac D, Robinson MD, Nair SS, Patterson KI, Tremethick DJ, Stirzaker C, Clark SJ - Acetylation of H2A.Z is a key epigenetic modification associated with gene deregulation and epigenetic remodeling in cancer. Genome Res. 2011 Jul 25. [Epub ahead of print] - Article
    AEpiA members / laboratory?

    Garvan Institute of Medical Research, NSW, Australia


    • June 2011

  • Godler DE SH, Bui QM, Ono M, Gehling F, Francis D, Amor DJ, Hopper JL, Hagerman R, Loesch DZ - FMR1 intron 1 methylation predicts FMRP expression in blood of female carriers of expanded FMR1 alleles. Journal of Molecular Diagnostics. 2011; Sep;13(5):528-36. Epub 2011 Jun 30. - Article
    AEpiA members / laboratory?

    The Murdoch Childrens Research Institute | The Royal Children's Hospital Melbourne


    • April 2011

  • Candiloro IL, Mikeska T, Dobrovic A. - Assessing combined methylation-sensitive high resolution melting and pyrosequencing for the analysis of heterogeneous DNA methylation. Epigenetics. 2011 Apr 1;6(4) 501-8. - Article
    AEpiA members / laboratory?

    Molecular Pathology Research & Development, Peter MacCallum Cancer Centre, Melbourne


    • January 2011

  • Hulf T, Sibbritt T, Wiklund ED, Bert S, Strbenac D, Statham AL, Robinson MD, Clark SJ. - Discovery pipeline for epigenetically deregulated miRNAs in cancer: integration of primary miRNA transcription. BMC Genomics. 2011 Jan 21;12:54 - Article
    AEpiA members / laboratory?

    Garvan Institute of Medical Research, NSW, Australia


    • November 2010

  • Devaney J, Stirzaker C, Qu W, Song JZ, Statham AL, Patterson KI, Horvath LG, Tabor B, Coolen MW, Hulf T, Kench JG, Henshall SM, Pe Benito R, Haynes AM, Mayor R, Peinado MA, Sutherland RL, Clark SJ - Epigenetic deregulation across chromosome 2q14.2 differentiates normal from prostate cancer and provides a regional panel of novel DNA methylation cancer biomarkers. Cancer Epidemiol Biomarkers Prev. 2011 Jan;20(1):148-59. Epub 2010 Nov 23. - Article
    AEpiA members / laboratory?

    Garvan Institute of Medical Research, NSW, Australia


    • October 2010

  • Jason P. Ross and Peter L. Molloy - Thirteenth AACR Special Conference on Cancer Epigenetics Cancer Res October 1 2010 70:7372 - Article
    AEpiA members / laboratory?

    CSIRO, North Ryde, NSW, Australia


    • September 2010

  • Godler DE et al- Methylation analysis of fragile X-related epigenetic elements may provide a suitable newborn screening test for fragile X syndrome. Genet Med. 2010 Sep;12(9):595. - Article
    AEpiA members / laboratory?

    The Murdoch Children's Research Institute, The Royal Children's Hospital, Melbourne, VIC


    • August 2010

  • Shalima S. Nair, Marcel W. Coolen, Clare Stirzaker, et al- Comparison of methyl-DNA immunoprecipitation (MeDIP) and methyl-CpG binding domain (MBD) protein capture for genome-wide DNA methylation analysis reveal CpG sequence coverage bias Epigenetics, Published online August 2010, for print January 2011 6:1, 1-11 - Article -
    AEpiA members / laboratory?

    Garvan Institute of Medical Research, NSW, Australia, Bioinformatics Division; Walter and Eliza Hall Institute of Medical Research, Melbourne, Victoria Australia and Nijmegen Centre for Molecular Life Sciences, Radboud University Nijmegen The Netherlands


  • Thomas Mikeska, Ida LM Candiloro, Alexander Dobrovic - The implications of heterogeneous DNA methylation for the accurate quantification of methylation Epigenomics, August 2010, Vol. 2, No. 4, Pages 561-573. - (open access) -
    AEpiA members / laboratory?

    Molecular Pathology Research & Development Laboratory, Department of Pathology, Peter MacCallum Cancer Centre, Locked Bag 1, A’Beckett Street, Melbourne, Victoria 8006, Australia and Univertity of Melbourne VIC


  • Ollikainen et al- DNA methylation analysis of multiple tissues from newborn twins reveals both genetic and intrauterine components to variation in the human neonatal epigenome. Human Molecular Genetics - 24 August 2010 - PubMed -
    AEpiA members / laboratory?

    Walter and Eliza Hall Institute of Medical Research Parkville VIC and Univertity of Melbourne VIC


  • Majewski et al- Opposing roles of polycomb repressive complexes in hematopoietic stem and progenitor cells Blood - 5 August 2010, Vol. 116, No. 5, Pages 731-739, (doi:10.2217/epi.10.36)
    AEpiA members / laboratory?

    Walter and Eliza Hall Institute of Medical Research Parkville VIC, Univertity of Melbourne VIC, RIKEN research center, Yokohama, Japan and Institute for Molecular Pathology, Vienna.


  • Robinson et al- Protocol matters: which methylome are you actually studying? Epigenomics - August 2010, Vol. 2, No. 4, Pages 587-598, (doi:10.2217/epi.10.36)
    AEpiA members / laboratory?

    Epigenetics Laboratory, Garvan Institute Sydney NSW and Walter and Eliza Hall Institute of Medical Research Parkville VIC


    • July 2010

  • Bachmann et al- Epigenetic silencing of BIM in glucocorticoid poor-responsive pediatric acute lymphoblastic leukemia, and its reversal by histone deacetylase inhibition. Blood 20 July 2010. PubMed
    AEpiA members / laboratory?

    Children's Cancer Institute Australia for Medical Research NSW, University of Milano-Bicocca Italy, University of New South Wales NSW, Murdoch Children's Research Institute Parkville VIC, Sydney Children's Hospital Randwick NSW, Cambridge Institute for Medical Research Cambridge UK.


  • Wiklund et al- Coordinated epigenetic repression of the miR-200 family and miR-205 in invasive bladder cancer International Journal of Cancer Article
    AEpiA members / laboratory?

    Department of Molecular Biology, Aarhus University, Denmark, Garvan Institute of Medical Research, NSW, Australia, Aarhus University Hospital, Denmark, Robert H. Lurie Comprehensive Cancer Center, Northwestern University, Feinberg School of Medicine, Chicago, IL

    • June 2010

  • Weeks et al- Silencing of TESTIN by dense biallelic promoter methylation is the most common molecular event in childhood acute lymphoblastic leukaemia. Mol Cancer. 2010 Jun 24;9:163. PubMed - Free Article
    AEpiA members / laboratory?

    Cancer Genetics Laboratory, Department of Biochemistry, University of Otago, NZ

    • May 2010

  • Statham et al- Repitools: an R package for the analysis of enrichment-based epigenomic data. Bioinformatics. 2010 Jul 1;26(13):1662-3. Epub 2010 May 10. - PubMed
    AEpiA members / laboratory?

    Epigenetics Laboratory, Garvan Institute, Sydney, NSW.

    • April 2010

  • Novakovic et al- Distinct Patterns of Gene-Specific Methylation in Mammalian Placentas: Implications for Placental Evolution and Function Placenta - Volume 31 Issue 4, April 2010, Pages 259-268 PubMed
    AEpiA members / laboratory?

    Murdoch Children's Research Institute Parkville VIC, University of Melbourne Parkville VIC International Agency for Research on Cancer France and Department of Psychiatry, Trinity College Dublin Ireland.


  • Zhang et al- Periconceptional undernutrition in normal and overweight ewes leads to increased adrenal growth and epigenetic changes in adrenal IGF2/H19 gene in offspring. FASEB -published online 6th April 2010. PMID: 20371620 - PubMed
    AEpiA members / laboratory?

    Sansom Institute for Health Research, University of South Australia, Adelaide, South Australia, Australia.

    • February 2010

  • Olsson et al - Prospects for epigenetic research within cohort studies of psychological disorder: A pilot investigation of a peripheral cell marker of epigenetic risk for depression Biological Psychology, Volume 83, Issue 2, February 2010, Pages 159-165 doi:10.1093/hmg/ddq037
    AEpiA members / laboratory?

    Melbourne Children's Research Institute VIC, Department of Neurology Royal Melbourne Hospital VIC, University of Melbourne VIC, University of Califormia at Davis Medical Center Sacramento CA USA, La Trobe University Melbourne VIC and Kimball Genetics CO USA.


  • Godler et al - Methylation of novel markers of fragile X alleles is inversely correlated with FMRP expression and FMR1 activation ratio. Human Molecular Genetics, February 18 2010 doi:10.1093/hmg/ddq037
    AEpiA members / laboratory?

    Melbourne Children's Research Institute VIC, Department of Neurology Royal Melbourne Hospital VIC, University of Melbourne VIC, University of Califormia at Davis Medical Center Sacramento CA USA, La Trobe University Melbourne VIC and Kimball Genetics CO USA.


  • Coolen et al - Consolidation of the cancer genome into domains of repressive chromatin by long-range epigenetic siencing (LRES) reduces transcriptional plasticity. Nat Cell Biol. 2010 Mar;12(3):235-46. Epub 2010 Feb 21. - PubMed
    AEpiA members / laboratory?

    Epigenetics Laboratory, Garvan Institute, Sydney, NSW.


  • Cropley et al- CpG Methylation of a Silent Controlling Element in the Murine Avy Allele Is Incomplete and Unresponsive to Methyl Donor Supplementation. PLoS One. 2010 Feb 4;5(2):e9055. PMID: 20140227 - PubMed - Free text
    AEpiA members / laboratory?

    Victor Chang Cardiac Research Institute, Sydney, NSW.

    • January 2010

  • Novakovic et al - DNA methylation-mediated down-regulation of DNA methyltransferase-1 (DNMT1) is coincident with, but not essential for, global hypomethylation in human placenta. Journal of Biological Chemistry January 13 2010 PubMed
    AEpiA members / laboratory?

    Melbourne Children's Research Institute VIC, Department of Paediatrics University of Melbourne VIC, Monash Institute of Medical Research Clayton VIC, University of Cambridge Cambridge UK, University College London UK and University of Adelaide SA.


  • Time Logo6th January 2010 - Epigenetics Features In Time Magazine: Why Your DNA Isn't Your Destiny

    • 2009

  • Suter et al- Paramutation: the tip of an epigenetic iceberg? Trends Genet. 2010 Jan;26(1):9-14. Epub 2009 Nov 27. PMID: 1994576 - PubMed

    AEpiA members / laboratory?

    Victor Chang Cardiac Research Institute, Sydney, NSW.

  • Cazzonelli CI, Cuttriss AJ, Cossetto SB, Pye W, Crisp P, Whelan J, Finnegan J, Turnbull C and Pogson BJ. - Regulation of carotenoid composition and shoot branching in Arabidopsis by a chromatin modifying histone methyltransferase, SDG8. Plant Cell. 21(1):39-53 2009Article

    AEpiA members / laboratory?

    School of Biochemistry and Molecular Biology, Australian National University, Canberra, University of Western Australia, Commonwealth Scientific and Industrial Research Organization, Canberra and Imperial College London, London UK.

  • Cazzonelli CI, Yin K and Pogson, BJ.- Potential implications for epigenetic regulation of carotenoid biosynthesis during root and shoot development. 2009 Plant Signaling & Behavior. 4(4):339-341PubMed
    AEpiA members / Laboratory?

    School of Biochemistry and Molecular Biology, Australian National University, Canberra, University of Western Australia.



  • Cazzonelli CI, Millar T, Finnegan J and Pogson, BJ. - Promoting gene expression in plants by permissive histone lysine methylation.2009 Plant Signaling & Behavior. 4(6):484-488 PuBMed
    AEpiA members / Laboratory?

    School of Biochemistry and Molecular Biology, Australian National University, Canberra, Commonwealth Scientific and Industrial Research Organization, Canberra,